Difference between revisions of "GARLI"
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Revision as of 20:36, 26 October 2011
Description
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GARLI is a program that performs phylogenetic inference using the maximum-likelihood criterion. Several sequence types are supported, including nucleotide, amino acid and codon. Version 2.0 adds support for partitioned models and morphology-like datatypes.
Template:App Location
Garli 2.0 is installed in /apps/garli/2.0
Running the application using modules
To use garli with the environment modules system at HPC the following commands are available:
Get module information for garli:
$module spider garli
Load the default application module:
$module load garli
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_GARLI_DIR - directory where garli is located.