Difference between revisions of "GAML"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|GAML}} |{{#vardefine:url|http://compbio.fmph.uniba.sk/gaml/}} <!--CONFIGURATION: OPTIONAL (|1}} means...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|GAML}} | |{{#vardefine:app|GAML}} | ||
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | GAML | + | GAML - Genome Assembly by Maximum Likelihood - is a prototype genome assembly tool based on maximizing likelihood of the assembly in a model encompaasing error rate, insert length and other features of indvidual sequencing technologies. It can combine datasets produced by different technologies (currently Illumina, 454 and Pacific Biosciences). |
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<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
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===Serial=== | ===Serial=== | ||
* {{#var:app}} | * {{#var:app}} | ||
| + | <!-- | ||
===Parallel (OpenMP)=== | ===Parallel (OpenMP)=== | ||
* intel | * intel | ||
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--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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<!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | <!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | ||
__NOTOC____NOEDITSECTION__ | __NOTOC____NOEDITSECTION__ | ||
| + | =Validation= | ||
| + | * Validate 4/5/2018 | ||
Revision as of 21:20, 6 December 2019
Description
GAML - Genome Assembly by Maximum Likelihood - is a prototype genome assembly tool based on maximizing likelihood of the assembly in a model encompaasing error rate, insert length and other features of indvidual sequencing technologies. It can combine datasets produced by different technologies (currently Illumina, 454 and Pacific Biosciences).
Required Modules
Serial
- GAML
System Variables
- HPC_GAML_DIR - installation directory
Validation
- Validate 4/5/2018