Difference between revisions of "GAML"
Jump to navigation
Jump to search
(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|GAML}} |{{#vardefine:url|http://compbio.fmph.uniba.sk/gaml/}} <!--CONFIGURATION: OPTIONAL (|1}} means...") |
Moskalenko (talk | contribs) |
||
| Line 18: | Line 18: | ||
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | GAML | + | GAML - Genome Assembly by Maximum Likelihood - is a prototype genome assembly tool based on maximizing likelihood of the assembly in a model encompaasing error rate, insert length and other features of indvidual sequencing technologies. It can combine datasets produced by different technologies (currently Illumina, 454 and Pacific Biosciences). |
| − | |||
| − | |||
<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
| − | |||
===Serial=== | ===Serial=== | ||
* {{#var:app}} | * {{#var:app}} | ||
| + | <!-- | ||
===Parallel (OpenMP)=== | ===Parallel (OpenMP)=== | ||
* intel | * intel | ||
Revision as of 18:38, 15 June 2015
Description
GAML - Genome Assembly by Maximum Likelihood - is a prototype genome assembly tool based on maximizing likelihood of the assembly in a model encompaasing error rate, insert length and other features of indvidual sequencing technologies. It can combine datasets produced by different technologies (currently Illumina, 454 and Pacific Biosciences).
Required Modules
Serial
- GAML
System Variables
- HPC_{{#uppercase:GAML}}_DIR - installation directory