Freesurfer

Environment Variables

In order for Freesurfer to work, the followings environment variables need to be set:

In bash:

$ export FREESURFER_HOME=/apps/freesurfer
$ source $FREESURFER_HOME/SetUpFreeSurfer.sh

In tcsh:

$ setenv FREESURFER_HOME /apps/freesurfer
$ source $FREESURFER_HOME/SetUpFreeSurfer.csh