Difference between revisions of "Freesurfer"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) |
|||
| Line 44: | Line 44: | ||
E.g. | E.g. | ||
| − | launch_freesurfer dcmunpack | + | launch_freesurfer dcmunpack |
| + | NOTE: | ||
| + | Freesurfer comes with Freeview software. Freeview is a completely separate software from Freesurfer and is used purely for data visualization. Freesurfer 6 includes Freeview 2.0. | ||
|}} | |}} | ||
Revision as of 18:35, 28 July 2017
Description
Freesurfer is a set of automated tools for reconstruction of the brain’s cortical surface from structural MRI data, and overlay of functional MRI data onto the reconstructed surface.
Required Modules
Serial
- freesurfer
System Variables
- HPC_{{#uppercase:freesurfer}}_DIR and FREESURFER_HOME - installation directory
Additional Information
Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'launch_freesurfer' wrapper after loading the module.
E.g.
launch_freesurfer dcmunpack
NOTE: Freesurfer comes with Freeview software. Freeview is a completely separate software from Freesurfer and is used purely for data visualization. Freesurfer 6 includes Freeview 2.0.
Citation
If you publish research that uses freesurfer you have to cite it as follows:
See [1] in the Freesurfer wiki on how to correctly cite Freesurfer tools.