FreeBayes
Revision as of 17:00, 10 June 2022 by Israel.herrera (talk | contribs)
Description
freebayes website
FreeBayes is a high-performance, flexible, and open-source Bayesian genetic variant detector. It operates on BAM alignment files, which are produced by most contemporary short-read aligners.
In addition to substantial performance improvements over its predecessors (PolyBayes, GigaBayes, and BamBayes), it expands the scope of SNP and small-indel variant calling to populations of individuals with heterogeneous copy number. FreeBayes is currently under active development.
Environment Modules
Run module spider freebayes to find out what environment modules are available for this application.
System Variables
- HPC_FREEBAYES_DIR - installation directory
- HPC_FREEBAYES_BIN - executable directory