Difference between revisions of "FreeBayes"
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Revision as of 15:42, 5 April 2018
Description
freebayes website
FreeBayes is a high-performance, flexible, and open-source Bayesian genetic variant detector. It operates on BAM alignment files, which are produced by most contemporary short-read aligners.
In addition to substantial performance improvements over its predecessors (PolyBayes, GigaBayes, and BamBayes), it expands the scope of SNP and small-indel variant calling to populations of individuals with heterogeneous copy number. FreeBayes is currently under active development.
Required Modules
Serial
- freebayes
System Variables
- HPC_{{#uppercase:freebayes}}_DIR - installation directory
- HPC_FREEBAYES_BIN - executable directory
Validation
- Validated 4/5/2018