Description

fraggenescan website

FragGeneScan is an application for finding (fragmented) genes in short reads.

Required Modules

modules documentation

Serial

fraggenescan

System Variables

HPC_{{#uppercase:fraggenescan}}_DIR - installation directory
HPC_FRAGGENESCAN_BIN - executable directory.

Additional Information

Two convenience scripts are provided within the FragGeneScan distribution - run_FragGeneScan.pl and post_process.pl - in addition to the main FragGeneScan binary.

Read the usage documentation for details on how to run the program.

Citation

Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747

Validation

Validated 4/5/2018

FragGeneScan