Difference between revisions of "FragGeneScan"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_FRAGGENESCAN_BIN - executable directory. | * HPC_FRAGGENESCAN_BIN - executable directory. | ||
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Revision as of 21:20, 6 December 2019
Description
FragGeneScan is an application for finding (fragmented) genes in short reads.
Required Modules
Serial
- fraggenescan
System Variables
- HPC_FRAGGENESCAN_DIR - installation directory
- HPC_FRAGGENESCAN_BIN - executable directory.
Additional Information
Two convenience scripts are provided within the FragGeneScan distribution - run_FragGeneScan.pl and post_process.pl - in addition to the main FragGeneScan binary.
Read the usage documentation for details on how to run the program.
Citation
Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747
Validation
- Validated 4/5/2018