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flye website  

Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After the initial assembly, Flye performs an extra repeat classification and analysis step to improve the structural accuracy of the resulting sequence. The package also includes a polisher module, which produces the final assembly of high nucleotide-level quality.

Environment Modules

Run module spider flye to find out what environment modules are available for this application.

System Variables

  • HPC_FLYE_DIR - installation directory
  • HPC_FLYE_BIN - executable directory