Difference between revisions of "Fastx Toolkit"
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Moskalenko (talk | contribs) m (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==") |
Moskalenko (talk | contribs) m (Text replace - "Usage policy" to "Usage Policy") |
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{{#if: {{#var: pbs}}|==PBS Script Examples== | {{#if: {{#var: pbs}}|==PBS Script Examples== | ||
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
| − | {{#if: {{#var: policy}}|==Usage | + | {{#if: {{#var: policy}}|==Usage Policy== |
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | ||
{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
Revision as of 16:30, 10 August 2012
Description
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
Installed Versions
- 0.0.13.1
Execution Environment and Modules
To use fastx_toolkit with the environment modules system at HPC the following commands are available:
Get module information for fastx toolkit:
$module spider fastx_toolkit
Load the default application module:
$module load fastx_toolkit
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_FASTX_TOOLKIT_DIR - directory where fastx_toolkit is located.
- HPC_FASTX_TOOLKIT_BIN - executable directory