Difference between revisions of "Fastx Toolkit"

Jump to navigation Jump to search
m (Text replace - "<!--Location--> {{App_Location|app={{#var:app}}|{{#var:ver}}}}" to "")
m (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==")
Line 38: Line 38:
<!-- -->
<!-- -->
{{#if: {{#var: mod}}|==Running the application using modules==
{{#if: {{#var: mod}}|==Execution Environment and Modules==
* HPC_FASTX_TOOLKIT_BIN - executable directory
* HPC_FASTX_TOOLKIT_BIN - executable directory

Revision as of 02:02, 10 August 2012


fastx_toolkit website  

The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

Installed Versions


Execution Environment and Modules

To use fastx_toolkit with the environment modules system at HPC the following commands are available:

Get module information for fastx toolkit:

$module spider fastx_toolkit

Load the default application module:

$module load fastx_toolkit

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_FASTX_TOOLKIT_DIR - directory where fastx_toolkit is located.
  • HPC_FASTX_TOOLKIT_BIN - executable directory