Difference between revisions of "Fastx Toolkit"

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[[Category:Software]][[Category:Bioinformatics]]
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[[Category:Software]][[Category:Biology]][[Category:NGS]]
 
{|<!--Main settings - REQUIRED-->
 
{|<!--Main settings - REQUIRED-->
 
|{{#vardefine:app|fastx_toolkit}}
 
|{{#vardefine:app|fastx_toolkit}}
 
|{{#vardefine:url|http://hannonlab.cshl.edu/fastx_toolkit/}}
 
|{{#vardefine:url|http://hannonlab.cshl.edu/fastx_toolkit/}}
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|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
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The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
 
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
 
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<!--Modules-->
==Installed Versions==
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==Environment Modules==
* 0.0.13.1
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
<!-- -->
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==System Variables==
==Required Modules==
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
[[Modules|modules documentation]]
 
===Serial===
 
*{{#var:app}}
 
 
* HPC_FASTX_TOOLKIT_BIN - executable directory
 
* HPC_FASTX_TOOLKIT_BIN - executable directory
 
{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==

Latest revision as of 16:37, 15 August 2022

Description

fastx_toolkit website  

The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

Environment Modules

Run module spider fastx_toolkit to find out what environment modules are available for this application.

System Variables

  • HPC_FASTX_TOOLKIT_DIR - installation directory
  • HPC_FASTX_TOOLKIT_BIN - executable directory