Difference between revisions of "Fastx Toolkit"

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The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
 
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
[[Modules|modules documentation]]
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_FASTX_TOOLKIT_BIN - executable directory
 
* HPC_FASTX_TOOLKIT_BIN - executable directory
 
{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==

Revision as of 21:20, 6 December 2019

Description

fastx_toolkit website  

The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.

Environment Modules

Run module spider fastx_toolkit to find out what environment modules are available for this application.

System Variables

  • HPC_FASTX_TOOLKIT_DIR - installation directory
  • HPC_FASTX_TOOLKIT_BIN - executable directory