FastStructure
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Description
A variational framework for inferring population structure from SNP genotype data.
It is based on a variational Bayesian framework for posterior inference and is written in Python2.x.
Required Modules
Serial
- faststructure
System Variables
- HPC_{{#uppercase:faststructure}}_DIR - installation directory
Citation
If you publish research that uses faststructure you have to cite it as follows:
Anil Raj, Matthew Stephens, and Jonathan K. Pritchard. fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets , (Genetics) June 2014 197:573-589 (Genetics, Biorxiv).
Validation
- Validated 4/5/2018