Difference between revisions of "FastSpar"
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| − | [[Category:Software]][[Category:Biology]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|fastspar}} | |{{#vardefine:app|fastspar}} | ||
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<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 15:26, 15 August 2022
Description
FastSpar is a c++ implementation of the SparCC algorithm published here: Friedman, J. & Alm, E. J. Inferring correlation networks from genomic survey data. PLoS Comput. Biol. 8, e1002687 (2012). FastSpar is up to several thousand times faster than the original Python2 implementation and uses much less memory.
Environment Modules
Run module spider fastspar to find out what environment modules are available for this application.
System Variables
- HPC_FASTSPAR_DIR - installation directory
- HPC_FASTSPAR_BIN - executable directory