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fastgep website  

Large-scale WGS dataset based studies are becoming increasingly common. WGS based pathogen surveillance and outbreak investigations create a demand for highly discriminative and time-efficient bioinformatics tools to transform large amounts of sequencing data into usable biological information such as relationship of the isolates.

Environment Modules

Run module spider fastgep to find out what environment modules are available for this application.

System Variables

  • HPC_FASTGEP_DIR - installation directory
  • HPC_FASTGEP_BIN - executable directory


If you publish research that uses fastgep you have to cite it as follows:

Genome-by-genome approach for fast bacterial genealogical relationship evaluation