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HPC Installation

The FSL software on the cluster is located in the following directory:


This is actually a symbolic link to the most recent minor version of FSL, which as of July 2nd, 2007 was 3.3.11.

If you are going to be using the FSL software on the cluster, there are some things you will need to do first.

  • For bash shell users:
$ export FSLDIR=/apps/fsl/4.1
$ . ${FSLDIR}/etc/fslconf/fsl.sh
$ export PATH=${FSLDIR}/bin:${PATH}
  • For tcsh shell users:
$ setenv FSLDIR /apps/fsl/4.1
$ source ${FSLDIR}/etc/fslconf/fsl.csh
$ setenv PATH ${FSLDIR}/bin:${PATH} 

If you are going to be using FSL on an on-going basis, it might be a good idea to place these commands into your start-up scripts. Just put these commands into .bashrc (for bash) or .cshrc (for tcsh) in your home directory.

Official Documentation

FSL Documentation