FSL

Home Website

Website

HPC Installation

The FSL software on the cluster is located in the following directory:

/apps/fsl/3.2/

If you are going to be using the FSL software on the cluster, there are some things you will need to do first.

• For bash shell users:

$ export FSLDIR=/apps/fsl/3.2/
$ . ${FSLDIR}/etc/fslconf/fsl.sh
$ export PATH=${FSLDIR}/bin:${PATH}

• For tcsh shell users:

$ setenv FSLDIR /usr/local/fsl
$ source ${FSLDIR}/etc/fslconf/fsl.csh
$ setenv PATH ${FSLDIR}/bin:${PATH} 

If you are going to be using FSL on an on-going basis, it might be a good idea to place these commands into your start-up scripts. Just put these commands into .bashrc (for bash) or .cshrc (for tcsh) in your home directory.

Official Documentation

FSL Documentation