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HPC Installation

The FSL software on the cluster is located in the following directory:


If you are going to be using the FSL software on the cluster, there are some things you will need to do first.

  • For bash shell users:
$ export FSLDIR=/apps/fsl/3.2/
$ . ${FSLDIR}/etc/fslconf/fsl.sh
$ export PATH=${FSLDIR}/bin:${PATH}
  • For tcsh shell users:
$ setenv FSLDIR /usr/local/fsl
$ source ${FSLDIR}/etc/fslconf/fsl.csh
$ setenv PATH ${FSLDIR}/bin:${PATH} 

If you are going to be using FSL on an on-going basis, it might be a good idea to place these commands into your start-up scripts. Just put these commands into .bashrc (for bash) or .cshrc (for tcsh) in your home directory.

Official Documentation

FSL Documentation