Difference between revisions of "FSL"
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==HPC Installation== | ==HPC Installation== | ||
The FSL software on the cluster is located in the following directory: | The FSL software on the cluster is located in the following directory: | ||
| − | /apps/fsl/3. | + | /apps/fsl/3.3 |
| + | |||
| + | This is actually a symbolic link to the most recent minor version of FSL, which as of July 2nd, 2007 was 3.3.11. | ||
If you are going to be using the FSL software on the cluster, there are some things you will need to do first. | If you are going to be using the FSL software on the cluster, there are some things you will need to do first. | ||
| Line 9: | Line 11: | ||
* For bash shell users: | * For bash shell users: | ||
<pre> | <pre> | ||
| − | $ export FSLDIR=/apps/fsl/3. | + | $ export FSLDIR=/apps/fsl/3.3 |
$ . ${FSLDIR}/etc/fslconf/fsl.sh | $ . ${FSLDIR}/etc/fslconf/fsl.sh | ||
$ export PATH=${FSLDIR}/bin:${PATH} | $ export PATH=${FSLDIR}/bin:${PATH} | ||
| Line 15: | Line 17: | ||
* For tcsh shell users: | * For tcsh shell users: | ||
<pre> | <pre> | ||
| − | $ setenv FSLDIR / | + | $ setenv FSLDIR /apps/fsl/3.3 |
$ source ${FSLDIR}/etc/fslconf/fsl.csh | $ source ${FSLDIR}/etc/fslconf/fsl.csh | ||
$ setenv PATH ${FSLDIR}/bin:${PATH} | $ setenv PATH ${FSLDIR}/bin:${PATH} | ||
</pre> | </pre> | ||
If you are going to be using FSL on an on-going basis, it might be a good idea to place these commands into your start-up scripts. Just put these commands into .bashrc (for bash) or .cshrc (for tcsh) in your home directory. | If you are going to be using FSL on an on-going basis, it might be a good idea to place these commands into your start-up scripts. Just put these commands into .bashrc (for bash) or .cshrc (for tcsh) in your home directory. | ||
| + | |||
==Official Documentation== | ==Official Documentation== | ||
[http://www.hpc.ufl.edu/doc/fsl/index.html FSL Documentation] | [http://www.hpc.ufl.edu/doc/fsl/index.html FSL Documentation] | ||
Revision as of 16:48, 2 July 2007
Home Website
HPC Installation
The FSL software on the cluster is located in the following directory:
/apps/fsl/3.3
This is actually a symbolic link to the most recent minor version of FSL, which as of July 2nd, 2007 was 3.3.11.
If you are going to be using the FSL software on the cluster, there are some things you will need to do first.
- For bash shell users:
$ export FSLDIR=/apps/fsl/3.3
$ . ${FSLDIR}/etc/fslconf/fsl.sh
$ export PATH=${FSLDIR}/bin:${PATH}
- For tcsh shell users:
$ setenv FSLDIR /apps/fsl/3.3
$ source ${FSLDIR}/etc/fslconf/fsl.csh
$ setenv PATH ${FSLDIR}/bin:${PATH}
If you are going to be using FSL on an on-going basis, it might be a good idea to place these commands into your start-up scripts. Just put these commands into .bashrc (for bash) or .cshrc (for tcsh) in your home directory.