FGMP

Description

fgmp website  

FGMP (Fungal Genome Mapping Project) is a bioinformatic pipeline designed to provide in an unbiased manner an estimation of genome completeness of a fungal genome assembly. The strategy is based on the screening of the genome using a set of highly diversified fungal proteins. This approach is likely to capture homologs from any fungal genome. FGMP is based on 593 protein markers and 31 highly conserved fungal genomic segments .

Environment Modules

Run module spider fgmp to find out what environment modules are available for this application.

System Variables

• HPC_{{#uppercase:fgmp}}_DIR - installation directory
• HPC_{{#uppercase:fgmp}}_BIN - executable directory

Citation

If you publish research that uses fgmp you have to cite it as follows:

Cisse, O. H. and Stajich J.E. FGMP: assessing fungal genome completeness and gene content. bioRxiv 049619; doi: https://doi.org/10.1101/049619 (2016).