Difference between revisions of "FEELnc"

Latest revision as of 18:53, 10 July 2020

Description

This document is intended to give a technical description of the FEELnc pipeline in order to annotate long non-coding RNAs (lncRNAs) based on reconstructed transcripts from RNA-seq data (either with or without a reference genome). For a more general overview of lncRNAs annotation using RNASeq and FEELnc specific advantages, you could point to the FEELnc paper.

Environment Modules

Run module spider feelnc to find out what environment modules are available for this application.

System Variables

HPC_FEELNC_DIR - installation directory
HPC_FEELNC_BIN - executable directory

Citation

If you publish research that uses feelnc you have to cite it as follows:

Wucher, V. et al. FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome. Nucleic Acids Res (2017). doi:10.1093/nar/gkw1306

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