Difference between revisions of "FASTA"

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m (Text replacement - "#uppercase" to "uc")
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sequences as well as help identify members of gene families.
 
sequences as well as help identify members of gene families.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
[[Modules|modules documentation]]
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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WRITE CITATION HERE
 
WRITE CITATION HERE
 
|}}
 
|}}
=Validation=
 
* Validated 4/5/2018
 

Revision as of 17:14, 10 June 2022

Description

fasta website  

The FASTA programs find regions of local or global (new) similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

Environment Modules

Run module spider fasta to find out what environment modules are available for this application.

System Variables

  • HPC_FASTA_DIR - installation directory
  • HPC_FASTA_BIN - executable directory

Available documentation

Several man pages are available:

  • fasta3, fastf3, fasts3, map_db, prss3, pvcomp

Type "man MANPAGE" to access them at the command line.