Exonerate

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Revision as of 02:02, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==")
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Description

exonerate website  

  • Exonerate is a generic tool for pairwise sequence comparison.
  • It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.
  • If you have questions, you can email the Author.

Available versions

  • 2.2

Execution Environment and Modules

To use exonerate with the environment modules system at HPC the following commands are available:

Get module information for exonerate: 

$module spider exonerate

Load the default application module: 

$module load exonerate

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_EXONERATE_DIR - directory where exonerate is located.





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