DynamicDBG
Revision as of 20:23, 5 July 2019 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|dynamicdbg}} |{{#vardefine:url|https://github.com/csirac/dynamicDBG}} <!--CO...")
Description
Compact data structures for the representation of de Bruijn graphs are important for genome sequence assembly. A fully dynamic data structure supporting efficient and exact membership queries for de Bruijn graphs was recently proposed in [1]. This software is an implementation of the data structure in [1] with dynamic edges (and not dynamic nodes).
Environment Modules
Run module spider dynamicdbg to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:dynamicdbg}}_DIR - installation directory
- HPC_{{#uppercase:dynamicdbg}})_BIN - executable directory