Difference between revisions of "Draft:UFRC Help and Documentation Test"

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(Created page with "Category:Docs __NOTOC__ <!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} --> Welcome to the <span class="plainlinks">[http://www.ufl.edu/ Uni...")
 
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[[Category:Docs]]
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Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
__NOTOC__
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{|class-"wikitable" style="border-width:0px;"
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|-
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|style="vertical-align:top; color: #444444;width:50%;"|
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==[[:Category:Essentials|For New Users]]==
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*[[Getting Started ]]: This page is intended to help new clients get started on HiPerGator.
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*[[Trainings|Training, Events, Videos]]: Material for learning HPG, including AI
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*[[New user training]]: Expands upon the content provided in the [https://coursera.org/groups/hipergator-account-training-c6fao/invitation HiPerGator Account Training in Coursera]
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*[[Development_and_Testing|Interactive Development and Testing]]: available options for interactive or small-scale testing work.
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*[[Storage|Practical Storage Use]]:  Here we discuss practical use of the various shared storage systems on HiPerGator.
  
<!-- {{Note|Interactive Jobs in the GPU partition are limited to 6 hrs|news}} -->
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==[[:Category:Help|Help]]==
Welcome to the <span class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, policies, and purchase request forms are on our [https://www.rc.ufl.edu main web site]. The information here is focused on particular applications, services, and usage examples. [https://support.rc.ufl.edu Provide Feedback].</span>
 
{{Note|[[https://lists.ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HiPerGator News and Announcements]] |news}}
 
=== For New Users ===
 
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
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* '''[[Getting Started ]]'''
 
* '''[[Training|Training, Events, Videos]]'''
 
* [[New user training]]
 
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* [[Development_and_Testing|Interactive Development and Testing]]
 
* [[Storage|Practical Storage Use]]
 
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* '''[[Get_Help|How To Get Help]]'''</span>
 
* '''[[Get_Help|How To Get Help]]'''</span>
 
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
 
* <span class="plainlinks">[https://support.rc.ufl.edu/enter_bug.cgi Submit a Support Request]</span>
* [[AI Help|AI Help]]
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* [[AI Help|AI Help]]: resources for understanding/improving ML tasks.
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==[[:Category:Scheduler|Scheduler]]==
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* [[SLURM_Commands|SLURM Commands]]: useful list includes submitting, checking, and cancelling jobs.
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* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]: how HPG prioritizes jobs/resources
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* [[Large-Memory_SMP_Servers|Big Memory Partition]]: RC's big memory servers and how use them.
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* [[Available Node Features]]: how to specify hardware such as processor families/models.
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* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
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* [[SLURM_Job_Arrays|SLURM Job Arrays]]: best way to submit a number of identical jobs
  
=== Interfaces and Access===
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==[[Transfer Data]] - Detailed resource on moving data to/from HPG==
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* [[Globus]]: best method if your data files are large, >1GB
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* [[Samba Access]]: most commonly used by UFRC clients for drive mapping to HiPerGator filesystems from their desktops.
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|style="vertical-align:top;border:none;width:5%;"|
* [[Jupyter_Notebooks| Jupyter (Python, R)]]
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* [[Galaxy|Galaxy Genomics Framework]]
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==Access==
* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]
 
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* [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]]
 
* [[GUI Programs|Running GUI Apps]]
 
 
* [[GPU_Access|GPU Access]]
 
* [[GPU_Access|GPU Access]]
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* [[Authentication With MFA|Multi-Factor Authentication]]: How to access HPG with Duo.
* [[Authentication With MFA|Multi-Factor Authentication]]
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* [[SSH Multiplexing]]: allows multiple connections to HPG without using Duo for every one.
* [[SSH Multiplexing]]
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* [[Blocked Accounts]]: how to know if/why you are blocked.
* [[Blocked Accounts]]
 
|-
 
|}
 
  
=== Scheduler ===
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==Interfaces==
{| cellpadding=10 width="100%" style="background-color: #FFF; border-color: #FF4A00; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
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* [[Jupyter_Notebooks| Jupyter (Python, R)]]: web-based development environment for teaching/testing/developing code.
|-
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* [[Galaxy|Galaxy Genomics Framework]]: web-based framework for biological computing.
| scope="col" width="150" |
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* [[Open OnDemand|OnDemand (Matlab, RStudio,...)]]: web interface for starting and attaching to HiPerGator jobs.
* [[SLURM_Commands|SLURM Commands]]
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* [[Managing Python environments and Jupyter_kernels | Conda and Jupyter Kernels ]]
* [[Account_and_QOS_limits_under_SLURM|Account and QOS Limits Under SLURM]]
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* [[GUI Programs|How To Run GUI Apps]]
| scope="col" width="150" |
 
* [[Large-Memory_SMP_Servers|Big Memory Partition]]
 
* [[Available Node Features]]
 
| scope="col" width="150" |
 
* [[Sample_SLURM_Scripts|SLURM Job Script Examples]]
 
* [[SLURM_Job_Arrays|SLURM Job Arrays]]
 
|}
 
 
 
=== Software and Reference Data===
 
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|-
 
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* [[Applications|Installed Applications]]
 
* [[UFRC_environment_module|HiPerGator ufrc Tools]]
 
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* [[Modules|Environment Modules System]]
 
  
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==[[:Category:Applications|Software and Reference Data]]==
* [[Reference Data]]
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* [[Applications|Installed Applications]]: List of HPG programs.
* [[AI Reference Datasets]]
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* [[UFRC_environment_module|HiPerGator ufrc Tools]]: various internal/external tools in the ufrc module.
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* [[Modules|Environment Modules System]]: explains RC's use of modules for containing programs.
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* [[Reference Data]]: repository of reference data accessible to everyone, including AI data.
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** [[AI Reference Datasets]]
  
=== Transfer Data ===
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==Specific Research Areas==
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|-
 
| scope="col" width="150" |
 
* [[Transfer Data]]
 
| scope="col" width="150" |
 
* [[Globus]]
 
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* [[Samba Access]]
 
|-
 
|}
 
  
=== Specific Research Areas ===
 
{|  cellpadding=10 width="100%" style="background-color: #FFF; border-color: #0021A5; border-style: solid; border-width: 3px 3px 3px 3px; color: #444444; vertical-align:top;"
 
|-
 
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* [[Biology|Biology]]
 
* [[Biology|Biology]]
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* [[Nlp|Natural Language Processing]]
 
* [[Nlp|Natural Language Processing]]
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__NOTOC__

Revision as of 21:28, 8 November 2022

Welcome to the University of Florida Research Computing Help and Documentation site. General information, announcements, and purchase request forms are on our main web site. The information here is focused on particular applications, services, and usage examples. Provide Feedback.

For New Users

Help

Scheduler

Transfer Data - Detailed resource on moving data to/from HPG

  • Globus: best method if your data files are large, >1GB
  • Samba Access: most commonly used by UFRC clients for drive mapping to HiPerGator filesystems from their desktops.

Access

Interfaces

Software and Reference Data

Specific Research Areas