Difference between revisions of "Dibig Tools"

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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
===Serial===
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 20:11, 10 June 2022

Description

dibig website  

dibig_tools is a collection of useful tools and scripts for HiPerGator. This module currently includes the following tools:

  • FASTools
  • DEMUX
  • MethylMapper
  • submit.py – User-friendly replacement for qsub
  • actor.py – Self-documenting scripts for HiPerGator
  • split-sam.sh – Split large SAM/BAM files.

Environment Modules

Run module spider dibig to find out what environment modules are available for this application.

System Variables

  • HPC_DIBIG_DIR - installation directory
  • HPC_DIBIG_BIN - executable directory