Difference between revisions of "Dibig Tools"

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m (Text replacement - "#uppercase" to "uc")
 
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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:20, 6 December 2019

Description

dibig website  

dibig_tools is a collection of useful tools and scripts for HiPerGator. This module currently includes the following tools:

  • FASTools
  • DEMUX
  • MethylMapper
  • submit.py – User-friendly replacement for qsub
  • actor.py – Self-documenting scripts for HiPerGator
  • split-sam.sh – Split large SAM/BAM files.

Required Modules

Serial

  • dibig

System Variables

  • HPC_DIBIG_DIR - installation directory
  • HPC_DIBIG_BIN - executable directory





Validation

  • Validated 4/5/2018