Difference between revisions of "Diamond"

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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 +
* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory with the PDF manual
 +
* HPC_{{uc:{{#var:app}}}}_REF or DIAMONDDB - reference database directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 16:42, 10 June 2022

Description

diamond website  

DIAMOND is a new high-throughput program for aligning a file of NGS reads against a protein reference database such as NR, at up to 16000 times the speed of BLASTX, with little loss of sensitivity.

See the full PDF Diamond Manual for usage details.

Environment Modules

Run module spider diamond to find out what environment modules are available for this application.

System Variables

  • HPC_DIAMOND_DIR - installation directory
  • HPC_DIAMOND_DOC - documentation directory with the PDF manual
  • HPC_DIAMOND_REF or DIAMONDDB - reference database directory