Difference between revisions of "Diamond"

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(Created page with "Category:SoftwareCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|diamond}} |{{#vardefine:url| http://ab.inf.uni-tuebingen.de/software/diamond/}} <...")
 
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speed of BLASTX, with little loss of sensitivity.
 
speed of BLASTX, with little loss of sensitivity.
  
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See the [https://github.com/bbuchfink/diamond/raw/master/diamond_manual.pdf full PDF Diamond Manual] for usage details.
  
 
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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory with the PDF manual
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* HPC_{{uc:{{#var:app}}}}_REF or DIAMONDDB - reference database directory
 
<!--Configuration-->
 
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{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:20, 6 December 2019

Description

diamond website  

DIAMOND is a new high-throughput program for aligning a file of NGS reads against a protein reference database such as NR, at up to 16000 times the speed of BLASTX, with little loss of sensitivity.

See the full PDF Diamond Manual for usage details.

Required Modules

Serial

  • diamond

System Variables

  • HPC_DIAMOND_DIR - installation directory
  • HPC_DIAMOND_DOC - documentation directory with the PDF manual
  • HPC_DIAMOND_REF or DIAMONDDB - reference database directory