Difference between revisions of "Diamond"
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(Created page with "Category:SoftwareCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|diamond}} |{{#vardefine:url| http://ab.inf.uni-tuebingen.de/software/diamond/}} <...") |
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| − | [[Category:Software]][[Category:Genomics]] | + | [[Category:Software]][[Category:Genomics]][[Category:Biology]] |
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speed of BLASTX, with little loss of sensitivity. | speed of BLASTX, with little loss of sensitivity. | ||
| + | See the [https://github.com/bbuchfink/diamond/raw/master/diamond_manual.pdf full PDF Diamond Manual] for usage details. | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory with the PDF manual | ||
| + | * HPC_{{uc:{{#var:app}}}}_REF or DIAMONDDB - reference database directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:41, 15 August 2022
Description
DIAMOND is a new high-throughput program for aligning a file of NGS reads against a protein reference database such as NR, at up to 16000 times the speed of BLASTX, with little loss of sensitivity.
See the full PDF Diamond Manual for usage details.
Environment Modules
Run module spider diamond to find out what environment modules are available for this application.
System Variables
- HPC_DIAMOND_DIR - installation directory
- HPC_DIAMOND_DOC - documentation directory with the PDF manual
- HPC_DIAMOND_REF or DIAMONDDB - reference database directory