Difference between revisions of "Diamond"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory with the PDF manual |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_REF or DIAMONDDB - reference database directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:20, 6 December 2019
Description
DIAMOND is a new high-throughput program for aligning a file of NGS reads against a protein reference database such as NR, at up to 16000 times the speed of BLASTX, with little loss of sensitivity.
See the full PDF Diamond Manual for usage details.
Required Modules
Serial
- diamond
System Variables
- HPC_DIAMOND_DIR - installation directory
- HPC_DIAMOND_DOC - documentation directory with the PDF manual
- HPC_DIAMOND_REF or DIAMONDDB - reference database directory