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deepbgc website  

DeepBGC detects BGCs in bacterial and fungal genomes using deep learning. DeepBGC employs a Bidirectional Long Short-Term Memory Recurrent Neural Network and a word2vec-like vector embedding of Pfam protein domains. Product class and activity of detected BGCs is predicted using a Random Forest classifier.

Environment Modules

Run module spider deepbgc to find out what environment modules are available for this application.

System Variables

  • HPC_DEEPBGC_DIR - installation directory
  • HPC_DEEPBGC_BIN - executable directory
  • DEEPBGC_DATA - data directory