DeepBGC detects BGCs in bacterial and fungal genomes using deep learning. DeepBGC employs a Bidirectional Long Short-Term Memory Recurrent Neural Network and a word2vec-like vector embedding of Pfam protein domains. Product class and activity of detected BGCs is predicted using a Random Forest classifier.
module spider deepbgc to find out what environment modules are available for this application.
- HPC_DEEPBGC_DIR - installation directory
- HPC_DEEPBGC_BIN - executable directory
- DEEPBGC_DATA - data directory