Deepbgc

From UFRC
Revision as of 20:08, 25 September 2020 by Maxprok (talk | contribs)
Jump to navigation Jump to search

Description

deepbgc website  

DeepBGC detects BGCs in bacterial and fungal genomes using deep learning. DeepBGC employs a Bidirectional Long Short-Term Memory Recurrent Neural Network and a word2vec-like vector embedding of Pfam protein domains. Product class and activity of detected BGCs is predicted using a Random Forest classifier.

Environment Modules

Run module spider deepbgc to find out what environment modules are available for this application.

System Variables

  • HPC_DEEPBGC_DIR - installation directory
  • HPC_DEEPBGC_BIN - executable directory

DEEPBGC_DATA - data directory