Difference between revisions of "DeepPicker"
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(Created page with "Category:SoftwareCategory:Deep LearningCategory:Cross-Molecule Training {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|deeppicker}} |{{#vardefine:url|https://g...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executables directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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launch_deeppicker autoPick.py --help | launch_deeppicker autoPick.py --help | ||
| − | To see the list of available | + | To see the list of available executables: |
launch_deeppicker ls $HPC_DEEPPICKER_BIN | launch_deeppicker ls $HPC_DEEPPICKER_BIN | ||
Revision as of 17:22, 12 January 2017
Description
DeepPicker employs a novel cross-molecule training strategy to capture common features of particles from previously-analyzed micrographs, and thus does not require any human intervention during particle picking.
Required Modules
System Variables
- HPC_{{#uppercase:deeppicker}}_DIR - installation directory
- HPC_{{#uppercase:deeppicker}}_BIN - executables directory
Additional Information
This software is installed in a container.
Basic usage:
launch_deeppicker autoPick.py --help
To see the list of available executables:
launch_deeppicker ls $HPC_DEEPPICKER_BIN