A tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data.
module spider decontaminer to find out what environment modules are available for this application.
- HPC_DECONTAMINER_DIR - installation directory
The location of the external tools used by decontaMiner must be present in your configure.txt file (which is passed by the -c option when you run decontaMiner.sh). In order to use the pre-loaded tools in the cluster you should set the [ext_soft] sections to values similar to the following: