Difference between revisions of "DeTiN"

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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|detin}} |{{#vardefine:url|https://github.com/broadinstitute/deTiN}} <!--CONFIGURATION: OPTIONAL (|1}}...")
 
m (Text replacement - "#uppercase" to "uc")
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:20, 6 December 2019

Description

detin website  

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

Environment Modules

Run module spider detin to find out what environment modules are available for this application.

System Variables

  • HPC_DETIN_DIR - installation directory