Difference between revisions of "DSSP"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory

Revision as of 21:20, 6 December 2019


DSSP website  

The DSSP program was designed by Wolfgang Kabsch and Chris Sander to standardize secondary structure assignment. DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. DSSP does not predict secondary structure.

Required Modules

modules documentation

Serial (with Intel compiler)

  • intel/2013
  • {{#lowercase:DSSP}}

Serial (with GCC)

  • gcc/4.7.2
  • {{#lowercase:DSSP}}

System Variables

  • HPC_DSSP_DIR - installation directory
  • HPC_DSSP_BIN - executable directory


  • Validated 4/5/2018