DSK

Description

dsk website  

DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory required for a mammalian dataset) with reasonably low temporary disk usage, and supports any value of k. DSK can count k-mers of large Illumina datasets on laptops and desktop computers.

Required Modules

Serial

• dsk

System Variables

• HPC_{{#uppercase:dsk}}_DIR - installation directory
• HPC_{{#uppercase:dsk}}_DOC - documentation directory
• HPC_{{#uppercase:dsk}}_EXE - example directory

Citation

If you publish research that uses dsk you have to cite it as follows:

Rizk, G., Lavenier, D. and Chikhi, R. DSK: k-mer counting with very low memory usage, Bioinformatics, 2013.