Difference between revisions of "DISCOVAR de novo"

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(Created page with "Category:SoftwareCategory:BiologyCategory:NGSCategory:Assembler {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|discovardenovo}} |{{#vardefine:url|https://s...")
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
* HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory
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* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory
* HPC_{{#uppercase:{{#var:app}}}}_EXE - examples directory
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* HPC_{{uc:{{#var:app}}}}_EXE - examples directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:21, 6 December 2019

Description

discovardenovo website  

DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping costs low. Currently it takes as input Illumina reads of length 250 or longer — produced on MiSeq or HiSeq 2500 — and from a single PCR-free library. These data enable a level of completeness and continuity that was not previously possible.

Environment Modules

Run module spider discovardenovo to find out what environment modules are available for this application.

System Variables

  • HPC_DISCOVARDENOVO_DIR - installation directory
  • HPC_DISCOVARDENOVO_BIN - executable directory
  • HPC_DISCOVARDENOVO_DOC - documentation directory
  • HPC_DISCOVARDENOVO_EXE - examples directory