Difference between revisions of "Cytoscape"
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Revision as of 18:45, 12 August 2022
Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration, analysis, and visualization.
module spider cytoscape to find out what environment modules are available for this application.
- HPC_CYTOSCAPE_DIR - installation directory
This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
module load gui cytoscape launch_gui_session -e Cytoscape
Connect with xpra locally using the xpra command
xpra attach ssh:email@example.com:3713