Difference between revisions of "Cutadapt"
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Moskalenko (talk | contribs) m (Text replace - "<!--Location--> {{App_Location|app={{#var:app}}|{{#var:ver}}}}" to "") |
Moskalenko (talk | contribs) m (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==") |
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* HPC_CUTADAPT_BIN - executable directory | * HPC_CUTADAPT_BIN - executable directory | ||
Revision as of 02:02, 10 August 2012
Description
cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when sequencing microRNAs.
Available versions
- 1.1
Execution Environment and Modules
To use cutadapt with the environment modules system at HPC the following commands are available:
Get module information for cutadapt:
$module spider cutadapt
Load the default application module:
$module load cutadapt
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_CUTADAPT_DIR - directory where cutadapt is located.
- HPC_CUTADAPT_BIN - executable directory