Difference between revisions of "Crux"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
* HPC_{{#uppercase:{{#var:app}}}}_DOC - html documentation directory
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* HPC_{{uc:{{#var:app}}}}_DOC - html documentation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:07, 6 December 2019

Description

crux website  

Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide identification.

Required Modules

System Variables

  • HPC_CRUX_DIR - installation directory
  • HPC_CRUX_BIN - executable directory
  • HPC_CRUX_DOC - html documentation directory




Citation

If you publish research that uses crux you have to cite it as follows:

Christopher Y. Park, Aaron A. Klammer, Lukas Käll, Michael J. MacCoss and William Stafford Noble. "Rapid and accurate peptide identification from tandem mass spectra." Journal of Proteome Research. 7(7):3022--3027, 2008.


Validation

  • Validated 4/5/2018