Difference between revisions of "Crux"

Latest revision as of 18:39, 12 August 2022

Description

crux website

Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide identification.

Environment Modules

Run module spider crux to find out what environment modules are available for this application.

System Variables

HPC_CRUX_DIR - installation directory
HPC_CRUX_BIN - executable directory
HPC_CRUX_DOC - html documentation directory

Citation

If you publish research that uses crux you have to cite it as follows:

Christopher Y. Park, Aaron A. Klammer, Lukas Käll, Michael J. MacCoss and William Stafford Noble. "Rapid and accurate peptide identification from tandem mass spectra." Journal of Proteome Research. 7(7):3022--3027, 2008.

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Bioinformatics]][[Category:Spectroscopy]]
+[[Category:Software]][[Category:Biology]][[Category:Spectroscopy]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|crux}}
@@ Line 21: / Line 21: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
-<!--
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
-* {{#var:app}}
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
-* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
-* HPC_{{#uppercase:{{#var:app}}}}_DOC - html documentation directory
+* HPC_{{uc:{{#var:app}}}}_DOC - html documentation directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==
@@ Line 78: / Line 68: @@
 <!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 __NOTOC____NOEDITSECTION__
-=Validation=
-* Validated 4/5/2018