Difference between revisions of "CisGenome"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replace - "<!-- ######## Template Configuration ######## --> <!--Edit definitions of the variables used in template calls Required variables: app - lowercase name of the application e.g. "amber" url - url of the software page (project, company prod) |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| (4 intermediate revisions by 2 users not shown) | |||
| Line 2: | Line 2: | ||
__NOEDITSECTION__ | __NOEDITSECTION__ | ||
[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | ||
| − | + | {|<!--Main settings - REQUIRED--> | |
| − | {| | ||
| − | <!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|cisgenome}} | |{{#vardefine:app|cisgenome}} | ||
|{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}} | |{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}} | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
| Line 32: | Line 25: | ||
===Serial=== | ===Serial=== | ||
*{{#var:app}} | *{{#var:app}} | ||
| − | * | + | ==System Variables== |
| − | {{#if: {{#var: exe}}|== | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | <!--Additional--> | ||
| + | {{#if: {{#var: exe}}|==Additional Information== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
| Line 49: | Line 44: | ||
WRITE CITATION HERE | WRITE CITATION HERE | ||
|}} | |}} | ||
| + | =Validation= | ||
| + | * Validated 4/5/2018 | ||
Revision as of 21:11, 6 December 2019
Description
An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis.
Required Modules
Serial
- cisgenome
System Variables
- HPC_CISGENOME_DIR - installation directory
Validation
- Validated 4/5/2018