Difference between revisions of "CisGenome"
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Moskalenko (talk | contribs) m (Text replace - "Usage policy" to "Usage Policy") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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__NOEDITSECTION__ | __NOEDITSECTION__ | ||
[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | ||
| − | + | {|<!--Main settings - REQUIRED--> | |
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| − | {| | ||
| − | <!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|cisgenome}} | |{{#vardefine:app|cisgenome}} | ||
|{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}} | |{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}} | ||
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|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
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<!--Modules--> | <!--Modules--> | ||
| − | + | ==Required Modules== | |
| − | + | [[Modules|modules documentation]] | |
| − | + | ===Serial=== | |
| − | {{#if: {{#var: exe}}|== | + | *{{#var:app}} |
| + | ==System Variables== | ||
| + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | <!--Additional--> | ||
| + | {{#if: {{#var: exe}}|==Additional Information== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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WRITE CITATION HERE | WRITE CITATION HERE | ||
|}} | |}} | ||
| + | =Validation= | ||
| + | * Validated 4/5/2018 | ||
Revision as of 21:11, 6 December 2019
Description
An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis.
Required Modules
Serial
- cisgenome
System Variables
- HPC_CISGENOME_DIR - installation directory
Validation
- Validated 4/5/2018