Difference between revisions of "CisGenome"
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Moskalenko (talk | contribs) m (Text replace - "<!--Location--> {{App_Location|app={{#var:app}}|{{#var:ver}}}}" to "") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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__NOEDITSECTION__ | __NOEDITSECTION__ | ||
[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | ||
− | + | {|<!--Main settings - REQUIRED--> | |
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− | {| | ||
− | <!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|cisgenome}} | |{{#vardefine:app|cisgenome}} | ||
|{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}} | |{{#vardefine:url|http://www.biostat.jhsph.edu/~hji/cisgenome/index.htm}} | ||
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|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
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An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis. | An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis. | ||
− | + | <!--Modules--> | |
− | + | ==Required Modules== | |
− | <!-- --> | + | [[Modules|modules documentation]] |
− | + | ===Serial=== | |
− | + | *{{#var:app}} | |
− | + | ==System Variables== | |
− | {{#if: {{#var: exe}}|== | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
+ | <!--Additional--> | ||
+ | {{#if: {{#var: exe}}|==Additional Information== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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{{#if: {{#var: pbs}}|==PBS Script Examples== | {{#if: {{#var: pbs}}|==PBS Script Examples== | ||
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
− | {{#if: {{#var: policy}}|==Usage | + | {{#if: {{#var: policy}}|==Usage Policy== |
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | ||
{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
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WRITE CITATION HERE | WRITE CITATION HERE | ||
|}} | |}} | ||
+ | =Validation= | ||
+ | * Validated 4/5/2018 |
Revision as of 21:11, 6 December 2019
Description
An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis.
Required Modules
Serial
- cisgenome
System Variables
- HPC_CISGENOME_DIR - installation directory
Validation
- Validated 4/5/2018