Difference between revisions of "Ciriquant"

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{{#if: {{#var: exe}}|==Usage Example==
{{#if: {{#var: exe}}1|==Usage Example==
$ module load ciriquant/1.1.2
$ module load ciriquant/1.1.2

Revision as of 15:00, 30 March 2022


ciriquant website  

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data

Environment Modules

Run module spider ciriquant to find out what environment modules are available for this application.

System Variables

  • HPC_CIRIQUANT_DIR - installation directory
  • HPC_CIRIQUANT_BIN - executable directory

Usage Example

$ module load ciriquant/1.1.2 $ CIRIquant -help


If you publish research that uses ciriquant you have to cite it as follows:

Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9